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Publications

  1. Barman S, Padhan J, and Sudhamalla B. Uncovering the non-histone interactome of the BRPF1 bromodomain using site-specific azide-acetyllysine photochemistry. J. Biol. Chem. 2024, 300, 105551.

  2. Barman S, Bardhan I, Padhan J, and Sudhamalla B. Integrated virtual screening and MD simulation approaches toward discovering potential inhibitors for targeting BRPF1 bromodomain in hepatocellular carcinoma. J. Mol. Graph. Model. 2024, 126, 108642. 

  3. Bardhan I, Barman S, Roy A, and Sudhamalla B. Novel insights into the recognition of acetylated histone H4 tail by the TRIM24 PHD-Bromo module. Biochem J. 2023, 480, 629-647.

  4. Yadav Y, Barman S, Roy A, Padhan J, Sudhamalla B. Uncovering the Domain-Specific Interactome of the TAF1 Tandem Reader Using Site-Specific Azide-Acetyllysine Photochemistry. Biochemistry. 2023, 62, 270-280. 

  5. Barman S, Sahoo SS, Padhan J and Sudhamalla B. Identification of novel natural product inhibitors of BRD4 using high throughput virtual screening and MD simulation. J. Biomol. Struct. Dyn. 2022, 1-13.

  6. Barman S, Roy A, Padhan J, Sudhamalla B. Molecular Insights into the Recognition of Acetylated Histone Modifications by the BRPF2 Bromodomain. Biochemistry, 2022, 61, 1774-178.

  7. Kuwik J, Wagner S, Sudhamalla B, Debiec R, Islam K. Hydrophobic cavity-directed azide-acetyllysine photochemistry for profiling non-histone interacting partners of bromodomain protein 1. RSC Chem. Biol. 2022. 3, 1061-1068. 

  8. Roy A, Barman S, Padhan J, Sudhamalla B. Engineering an acetyllysine reader with a photocrosslinking amino acid for interactome profiling. Chem. Commun. 2021, 57, 9866-9869. 

  9. Barman S, Roy A, Bardhan I, Kandasamy T, Shivani S, Sudhamalla B. Insights into the Molecular Mechanisms of Histone Code Recognition by the BRPF3 Bromodomain. Chem. Asian J. 2021, 16, 3404-3412. 

  10. Sappa S, Dey D, Sudhamalla B, Islam K. Catalytic Space Engineering as a Strategy to Activate C-H Oxidation on 5-Methylcytosine in Mammalian Genome. J. Am. Chem. Soc. 2021, 143, 11891-11896. 

  11. Wagner S, Sudhamalla B, Mannes P, Sappa S, Kavoosi S, Dey D, Wang S, Islam K. Engineering bromodomains with a photoactive amino acid by engaging 'Privileged' tRNA synthetases. Chem. Commun. 2020, 56, 3641-3644. 

  12. Kavoosi S, Sudhamalla B, Dey D, Shriver K, Arora S, Sappa S, Islam K. Site- and degree-specific C-H oxidation on 5-methylcytosine homologues for probing active DNA demethylation. Chem. Sci. 2019,10, 10550-10555. 

  13. Sudhamalla B, Wang S, Snyder V, Kavoosi S, Arora S, Islam K. Complementary Steric Engineering at the Protein-Ligand Interface for Analogue-Sensitive TET Oxygenases. J. Am. Chem. Soc. 2018,140, 10263-10269. 

  14. Perell GT, Mishra NK, Sudhamalla B, Ycas PD, Islam K, Pomerantz WCK. Specific Acetylation Patterns of H2A.Z Form Transient Interactions with the BPTF Bromodomain. Biochemistry. 2017, 56, 4607-4615. 

  15. Sudhamalla B, Dey D, Breski M, Islam K. A rapid mass spectrometric method for the measurement of catalytic activity of ten-eleven translocation enzymes. Anal. Biochem. 2017, 534:28-35. 

  16. Sudhamalla B, Dey D, Breski M, Nguyen T, Islam K. Site-specific azide-acetyllysine photochemistry on epigenetic readers for interactome profiling. Chem. Sci. 2017, 8, 4250-4256. 

  17. Breski M, Dey D, Obringer S, Sudhamalla B, Islam K. Engineering Biological C-H Functionalization Leads to Allele-Specific Regulation of Histone Demethylases. J. Am. Chem. Soc. 2016,138, 13505-13508. 

  18. Sudhamalla B, Kumar M, Roy KR, Kumar RS, Bhuyan AK. Cysteine endoprotease activity of human ribosomal protein S4 is entirely due to the C-terminal domain, and is consistent with Michaelis-Menten mechanism. Biochim. Biophys. Acta. 2013,1830, 5342-9. 

  19. Sudhamalla B, Kumar M, Kumar RS, Sashi P, Yasin UM, Ramakrishna D, Rao PN, Bhuyan AK. Enzyme dimension of the ribosomal protein S4 across plant and animal kingdoms. Biochim. Biophys. Acta. 2013, 1830, 5335-41. 

  20. Yadaiah M, Sudhamalla B, Rao PN, Roy KR, Ramakrishna D, Hussain Syed G, Ramaiah KV, Bhuyan AK. Arrested cell proliferation through cysteine protease activity of eukaryotic ribosomal protein S4. FASEB J. 2013, 27,803-10. 

  21. Sanchita, Chauhan R, Soni G, Sudhamalla B, Sharma A. Docking and molecular dynamics studies of peptide inhibitors of ornithine decarboxylase: a rate- limiting enzyme for the metabolism of Fusarium solani. J. Biomol. Struct. Dyn. 2013, 31, 874-87. 

  22. Sudhamalla B, Yadaiah M, Ramakrishna D, Bhuyan AK. Cysteine protease attribute of eukaryotic ribosomal protein S4. Biochim. Biophys. Acta. 2012, 1820, 1535-42. 

  23. Mamidala P, Wijeratne AJ, Wijeratne S, Kornacker K, Sudhamalla B, Rivera- Vega LJ, Hoelmer A, Meulia T, Jones SC, Mittapalli O. RNA-Seq and molecular docking reveal multi-level pesticide resistance in the bed bug. BMC Genomics. 2012, 13:6. 

  24. Yadaiah M, Nageswara Rao P, Sudhamalla B, Ramakrishna D, Mahammad Yasin U, Bhuyan AK. Cloning, Escherichia coli expression, purification, characterization, and enzyme assay of the ribosomal protein S4 from wheat seedlings (Triticum vulgare). Protein. Expr. Purif. 2012, 81, 55-62. 

  25. Sudhamalla B, Gokara M, Ahalawat N, Amooru DG, Subramanyam R. Molecular dynamics simulation and binding studies of beta-sitosterol with human serum albumin and its biological relevance. J. Phys. Chem. B. 2010,114, 9054-62. 

  26. Neelam S, Gokara M, Sudhamalla B, Amooru DG, Subramanyam R. Interaction studies of coumaroyltyramine with human serum albumin and its biological importance. J. Phys. Chem. B. 2010,114, 3005-12. 

  27. Gokara M, Sudhamalla B, Amooru DG, Subramanyam R. Molecular interaction studies of trimethoxy flavone with human serum albumin. PLoS One. 2010, 5, e8834. 

  28. Subramanyam R, Goud M, Sudhamalla B, Reddeem E, Gollapudi A, Nellaepalli S, Yadavalli V, Chinnaboina M, Amooru DG. Novel binding studies of human serum albumin with trans-feruloyl maslinic acid. J. Photochem. Photobiol. B. 2009, 95, 81-8. 

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